DNA Binding Motif

						

			
Accessions: M0448 (AthalianaCistrome v4_May2016), MA1664.1 (JASPAR 2024)

			
Names: HSFA6B.DAP, T11368;, HSFA6B
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1, JASPAR 2024 2
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 15
Consensus: rGAAsmTTCTAGAAg
Weblogo: 
PSSM: P0      A      C      G      T
01    328     61    168     43      r
02      1      1    595      3      G
03    580      2      8     10      A
04    509      6     16     69      A
05     73    154    291     82      s
06    159    191    131    119      m
07     70     34     13    483      T
08     22      8     16    554      T
09      4    572     24      0      C
10     15    101     46    438      T
11    411     45    136      8      A
12      0      5    595      0      G
13    562     13      6     19      A
14    420     34     59     87      A
15    139    121    242     98      g
Type: Heterodimer
Binding TFs: Q9LUH8 / T11368 (HSF-type DNA-binding)
Q9LUH8
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]


Huang YC, Niu CY, Yang CR, Jinn TL. The Heat Stress Factor HSFA6b Connects ABA Signaling and ABA-Mediated Heat Responses. Plant Physiol 172:1182-1199 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.