DNA Binding Motif

						

			
Accessions: VSX1_full (HumanTF 1.0)

			
Names: VSX1
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: monomeric; SELEX cycle: 3
Length: 11
Consensus: rgcyAATTrrc
Weblogo: 
PSSM: P0      A      C      G      T
01   2215   1033   2220   1479      r
02    953   1042   4207    746      g
03    853   5164   1084   1784      c
04    864   6490    531   6947      y
05   6947   1399    531    922      A
06   6947    305    382    209      A
07     94    383    184   6947      T
08   1028   1039   1095   6947      T
09   6947    476   4337   1269      r
10   1844   1224   2577   1302      r
11   1291   2810   1313   1533      c
Binding TFs: VSX1_full (Homeobox domain)
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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