DNA Binding Motif

						

			
Accessions: EEAD0040 (EEADannot 2023-12-22)

			
Names: ARF36_DYAD11
Organisms: Zea mays
Libraries: EEADannot 2023-12-22 1
1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed]
Length: 21
Consensus: mrACAwvkghwdcmbwTGTyk
Weblogo: 
PSSM: P0      A      C      G      T
01    706    754    591    345      m
02    895    374    901    226      r
03   2396      0      0      0      A
04      0   2396      0      0      C
05   2396      0      0      0      A
06    856    460    383    697      w
07    635    602    728    431      v
08    597    474    616    709      k
09    576    583    694    543      g
10    611    615    453    717      h
11    602    596    596    602      w
12    717    453    615    611      d
13    543    694    583    576      c
14    709    616    474    597      m
15    431    728    602    635      b
16    697    383    460    856      w
17      0      0      0   2396      T
18      0      0   2396      0      G
19      0      0      0   2396      T
20    226    901    374    895      y
21    345    591    754    706      k
Binding TFs: AuxinResponseFactor36 (AUX/IAA family, B3 DNA binding domain, Auxin response factor)
			
Publications: Galli M, Khakhar A, Lu Z, Chen Z, Sen S, Joshi T, Nemhauser JL, Schmitz RJ, Gallavotti A. The DNA binding landscape of the maize AUXIN RESPONSE FACTOR family. Nat Commun 9:4526 (2018). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.