DNA Binding Motif

						

			
Accessions: MA1853.1 (JASPAR 2024)

			
Names: Erf-a
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 20
Consensus: rrrramcGGAAGTrmmaaaa
Weblogo: 
PSSM: P0      A      C      G      T
01    280    216    281    224      r
02    266    219    292    223      r
03    307    205    279    209      r
04    337    177    264    222      r
05    445    123    247    185      a
06    258    333    225    183      m
07    214    543    124    119      c
08      9     11    969     11      G
09     13     12    958     17      G
10    966     13      7     14      A
11    839     25     11    125      A
12    210     36    740     14      G
13     47    116     55    782      T
14    298    191    322    189      r
15    312    262    242    184      m
16    286    254    246    214      m
17    292    246    236    226      a
18    289    245    223    242      a
19    293    245    225    238      a
20    280    249    233    237      a
Type: Heterodimer
Binding TFs: Q4H3L7 (Ets-domain)
Q4H3L7
			
Publications: Khoueiry P, Rothbächer U, Ohtsuka Y, Daian F, Frangulian E, Roure A, Dubchak I, Lemaire P. A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr Biol 20:792-802 (2010). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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