DNA Binding Motif
| Accessions: | M1308_1.02 (CISBP 1.02) |
| Names: | PK14402.1, T116478_1.02 |
| Organisms: | Cannabis sativa |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Length: | 11 |
| Consensus: | rtaGATTCcgy |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.3002 0.1964 0.3070 0.1964 r 02 0.2355 0.1250 0.2197 0.4198 t 03 0.5754 0.0471 0.1419 0.2356 a 04 0.0002 0.0002 0.8889 0.1107 G 05 0.9995 0.0002 0.0002 0.0002 A 06 0.0002 0.0002 0.0002 0.9995 T 07 0.0002 0.0949 0.0002 0.9047 T 08 0.0002 0.9995 0.0002 0.0002 C 09 0.0538 0.6469 0.2456 0.0538 c 10 0.1252 0.2185 0.4352 0.2211 g 11 0.2031 0.2964 0.2031 0.2975 y |
| Binding TFs: | T116478_1.02 (Myb-like DNA-binding domain) |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
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