DNA Binding Motif

						

			
Accessions: UP00275A_1 (UniPROBE 20160601)

			
Names: "Protein STB3, SIN3-binding protein 3, Stb3, YD9489.04c, YDR169C"
Organisms: Saccharomyces cerevisiae
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 21
Consensus: gtyyaaAwTTTTTCActyhkk
Weblogo: 
PSSM: P0      A      C      G      T
01   0.10   0.17   0.55   0.19      g
02   0.17   0.17   0.20   0.46      t
03   0.18   0.42   0.06   0.34      y
04   0.19   0.38   0.11   0.32      y
05   0.51   0.06   0.19   0.24      a
06   0.55   0.12   0.15   0.18      a
07   0.78   0.04   0.07   0.12      A
08   0.50   0.03   0.03   0.44      w
09   0.10   0.01      0   0.89      T
10   0.05   0.01      0   0.94      T
11   0.01      0      0   0.98      T
12   0.01      0   0.02   0.97      T
13      0   0.06   0.02   0.92      T
14      0   0.99      0      0      C
15   0.97   0.01   0.03      0      A
16   0.15   0.59   0.08   0.18      c
17   0.13   0.12   0.14   0.61      t
18   0.17   0.33   0.20   0.31      y
19   0.31   0.25   0.13   0.31      h
20   0.23   0.17   0.32   0.28      k
21   0.23   0.18   0.30   0.29      k
Binding TFs: UP00275A (Putative Sin3 binding protein)
Binding Sites: AAAATTTC
AAATTTCA
AATTTCAC
AATTTCAT
AATTTTCA
AATTTTTC
ATATTTCA
ATGAAAAA
ATTTTCAA
ATTTTTCA
CTGAAAAA
CTTTTTCA
GTGAAAAA
GTTTTTCA
TGAAAAAA
TGGAAAAA
TTGAAAAA
ATTTTTCG
GAAATTTC
GAATTTCA
			
Publications: *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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