DNA Binding Motif

						

			
Accessions: 1h88_ABC (3D-footprint 20231221)

			
Names: CCAAT/ENHANCER BINDING PROTEIN BETA
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX1
Length: 20
Consensus: GTGGCGcAAnnnnTAACGGA
Weblogo: 
PSSM: P0      A      C      G      T
01     15      5     71      5      G
02      0      0      0     96      T
03      0      0     96      0      G
04      0      0     96      0      G
05      0     96      0      0      C
06      0      0     96      0      G
07     20     60      6     10      c
08     96      0      0      0      A
09     96      0      0      0      A
10     24     24     24     24      n
11     24     24     24     24      n
12     24     24     24     24      n
13     24     24     24     24      n
14     10      6      5     75      T
15     96      0      0      0      A
16     96      0      0      0      A
17      0     96      0      0      C
18     10      0     81      5      G
19      0      5     90      1      G
20     75      6     10      5      A
Type: Heterodimer
Binding TFs: 1h88_A (bZIP transcription factor, Basic region leucine zipper)
1h88_B (bZIP transcription factor, Basic region leucine zipper)
Binding Sites: 1h88_D
1h88_E
			
Publications: Tahirov T.H, Sato K, Ichikawa-Iwata E, Sasaki M, Inoue-Bungo T, Shiina M, Kimura K, Takata S, Fujikawa A, Morii H, Kumasaka T, Yamamoto M, Ishii S, Ogata K. Mechanism of c-Myb-C/EBP beta cooperation from separated sites on a promoter. Cell 108:57-70 (2002). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.