DNA Binding Motif
| Accessions: | MA0014.3 (JASPAR 2024) |
| Names: | PAX5 |
| Organisms: | Homo sapiens |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ChIP-seq |
| Length: | 12 |
| Consensus: | rrGCGTGACCmb |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 540 179 578 115 r 02 625 148 354 285 r 03 18 151 1231 12 G 04 18 1276 34 84 C 05 111 35 1243 23 G 06 94 88 30 1200 T 07 16 37 1355 4 G 08 1243 39 70 60 A 09 32 1305 57 18 C 10 69 1081 118 144 C 11 377 405 312 318 m 12 263 403 359 387 b |
| Type: | Heterodimer |
| Binding TFs: | Q02548 ('Paired box' domain, Paired-box protein 2 C terminal) Q02548 |
| Binding Sites: | MA0014.3.1 MA0014.3.10 MA0014.3.11 MA0014.3.12 MA0014.3.13 MA0014.3.14 MA0014.3.15 MA0014.3.16 MA0014.3.17 MA0014.3.18 MA0014.3.19 MA0014.3.2 MA0014.3.20 MA0014.3.3 MA0014.3.4 MA0014.3.5 MA0014.3.6 MA0014.3.7 MA0014.3.8 MA0014.3.9 |
| Publications: | Czerny T., Schaffner G., Busslinger M. DNA sequence recognition by Pax proteins: bipartite structure of the paired domain and its binding site. Genes Dev. 7:2048-2061 (1993). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.