DNA Binding Motif

						

			
Accessions: GFI1_2 (HT-SELEX2 May2017)

			
Names: GFI1
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 21
Consensus: cmAATCACdGCaccbCACTcc
Weblogo: 
PSSM: P0      A      C      G      T
01   3668  11575   7376   7527      c
02  19146  10155    812    565      m
03  30168      2      0      0      A
04  30150      0      0      1      A
05      0      0      0  30161      T
06     15  30139      0     10      C
07  29255      0      0   1594      A
08    838  27769   3888      0      C
09   7748     54   8349  13996      d
10   2294    266  27514    888      G
11    292  27891      0   3702      C
12  16713   5221   4079   4134      a
13   7439  11926   3466   7316      c
14   3329  13031   6535   7251      c
15   1755   8364   8101  11927      b
16    405  28701   1290    594      C
17  29077     16    286   1459      A
18   1406  27078    710   3526      C
19   1977     57      0  28906      T
20   5480  21158   4249   3408      c
21   7436  11510   6754   4447      c
Binding TFs: GFI1 (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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