DNA Binding Motif
| Accessions: | SigK_1 (DBTBS 1.0) |
| Names: | SigK_1 |
| Organisms: | Bacillus subtilis |
| Libraries: | DBTBS 1.0 1 1 Sierro N, Makita Y, de Hoon M, Nakai K. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic acids research 36:D93-6 (2008). [Pubmed] |
| Length: | 4 |
| Consensus: | mACm |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.26 0.64 0 0.09 m 02 0.72 0 0.18 0.09 A 03 0 0.98 0.02 0 C 04 0.44 0.56 0 0 m |
| Binding TFs: | SigK (Sigma-70 region 2 ) |
| Binding Sites: | cgeA_6 cgeC_2 cotA_1 cotB_3 cotC_3 cotD_3 cotE_2 cotF_1 cotG_2 cotH_2 cotM_2 cotSA cotT_1 cotV_2 cotX_3 cotY_3 cwlC cwlH_2 ftsY_3 gerE_1 gerPA_1 spoIVCB_4 spoVFA spoVK_2 spsA sspG_3 tgl yabG ydgB_2 yfhP_1 yfhP_2 yfnE_2 yfnH yhcO_2 yhjR_1 yitB yitC_2 yjcB yjcC yjcZ_2 ykuD ylbD yndL yngK yoaN_1 yobW yodH yozR_1 ypqA_2 yrkC ysnD_1 ytlA yxeE |
| Publications: | Chen N.Y, Jiang S.Q, Klein D.A, Paulus H. Organization and nucleotide sequence of the Bacillus subtilis diaminopimelate operon, a cluster of genes encoding the first three enzymes of diaminopimelate synthesis and dipicolinate synthase. The Journal of biological chemistry 268:9448-65 (1993). [Pubmed] Eichenberger P, Fujita M, Jensen S.T, Conlon E.M, Rudner D.Z, Wang S.T, Ferguson C, Haga K, Sato T, Liu J.S, Losick R. The program of gene transcription for a single differentiating cell type during sporulation in Bacillus subtilis. PLoS biology 2:e328 (2004). [Pubmed] Roels S, Losick R. Adjacent and divergently oriented operons under the control of the sporulation regulatory protein GerE in Bacillus subtilis. Journal of bacteriology 177:6263-75 (1995). [Pubmed] Sandman K, Kroos L, Cutting S, Youngman P, Losick R. Identification of the promoter for a spore coat protein gene in Bacillus subtilis and studies on the regulation of its induction at a late stage of sporulation. Journal of molecular biology 200:461-73 (1988). [Pubmed] Zheng L, Halberg R, Roels S, Ichikawa H, Kroos L, Losick R. Sporulation regulatory protein GerE from Bacillus subtilis binds to and can activate or repress transcription from promoters for mother-cell-specific genes. Journal of molecular biology 226:1037-50 (1992). [Pubmed] Zheng L.B, Losick R. Cascade regulation of spore coat gene expression in Bacillus subtilis. Journal of molecular biology 212:645-60 (1990). [Pubmed] Cutting S, Zheng L.B, Losick R. Gene encoding two alkali-soluble components of the spore coat from Bacillus subtilis. Journal of bacteriology 173:2915-9 (1991). [Pubmed] Sacco M, Ricca E, Losick R, Cutting S. An additional GerE-controlled gene encoding an abundant spore coat protein from Bacillus subtilis. Journal of bacteriology 177:372-7 (1995). [Pubmed] Naclerio G, Baccigalupi L, Zilhao R, De Felice M, Ricca E. Bacillus subtilis spore coat assembly requires cotH gene expression. Journal of bacteriology 178:4375-80 (1996). [Pubmed] Henriques A.O, Beall B.W, Moran C.P. CotM of Bacillus subtilis, a member of the alpha-crystallin family of stress proteins, is induced during development and participates in spore outer coat formation. Journal of bacteriology 179:1887-97 (1997). [Pubmed] Reischl S, Thake S, Homuth G, Schumann W. Transcriptional analysis of three Bacillus subtilis genes coding for proteins with the alpha-crystallin domain characteristic of small heat shock proteins. FEMS microbiology letters 194:99-103 (2001). [Pubmed] Abe A, Koide H, Kohno T, Watabe K. A Bacillus subtilis spore coat polypeptide gene, cotS. Microbiology (Reading, England) 141 ( Pt 6):1433-42 (1995). [Pubmed] Takamatsu H, Chikahiro Y, Kodama T, Koide H, Kozuka S, Tochikubo K, Watabe K. A spore coat protein, CotS, of Bacillus subtilis is synthesized under the regulation of sigmaK and GerE during development and is located in the inner coat layer of spores. Journal of bacteriology 180:2968-74 (1998). [Pubmed] Kuwana R, Kasahara Y, Fujibayashi M, Takamatsu H, Ogasawara N, Watabe K. Proteomics characterization of novel spore proteins of Bacillus subtilis. Microbiology (Reading, England) 148:3971-82 (2002). [Pubmed] Bourne N, FitzJames P.C, Aronson A.I. Structural and germination defects of Bacillus subtilis spores with altered contents of a spore coat protein. Journal of bacteriology 173:6618-25 (1991). [Pubmed] Aronson A.I, Song H.Y, Bourne N. Gene structure and precursor processing of a novel Bacillus subtilis spore coat protein. Molecular microbiology 3:437-44 (1989). [Pubmed] Zhang J, Ichikawa H, Halberg R, Kroos L, Aronson A.I. Regulation of the transcription of a cluster of Bacillus subtilis spore coat genes. Journal of molecular biology 240:405-15 (1994). [Pubmed] Kuroda A, Asami Y, Sekiguchi J. Molecular cloning of a sporulation-specific cell wall hydrolase gene of Bacillus subtilis. Journal of bacteriology 175:6260-8 (1993). [Pubmed] Nugroho F.A, Yamamoto H, Kobayashi Y, Sekiguchi J. Characterization of a new sigma-K-dependent peptidoglycan hydrolase gene that plays a role in Bacillus subtilis mother cell lysis. Journal of bacteriology 181:6230-7 (1999). [Pubmed] Yamamoto H, Mori M, Sekiguchi J. Transcription of genes near the sspE locus of the Bacillus subtilis genome. Microbiology (Reading, England) 145 ( Pt 8):2171-80 (1999). [Pubmed] Kakeshita H, Oguro A, Amikura R, Nakamura K, Yamane K. Expression of the ftsY gene, encoding a homologue of the alpha subunit of mammalian signal recognition particle receptor, is controlled by different promoters in vegetative and sporulating cells of Bacillus subtilis. Microbiology (Reading, England) 146 ( Pt 10):2595-603 (2000). [Pubmed] Cutting S, Panzer S, Losick R. Regulatory studies on the promoter for a gene governing synthesis and assembly of the spore coat in Bacillus subtilis. Journal of molecular biology 207:393-404 (1989). [Pubmed] Behravan J, Chirakkal H, Masson A, Moir A. Mutations in the gerP locus of Bacillus subtilis and Bacillus cereus affect access of germinants to their targets in spores. Journal of bacteriology 182:1987-94 (2000). [Pubmed] Kunkel B, Sandman K, Panzer S, Youngman P, Losick R. The promoter for a sporulation gene in the spoIVC locus of Bacillus subtilis and its use in studies of temporal and spatial control of gene expression. Journal of bacteriology 170:3513-22 (1988). [Pubmed] Foulger D, Errington J. Sequential activation of dual promoters by different sigma factors maintains spoVJ expression during successive developmental stages of Bacillus subtilis. Molecular microbiology 5:1363-73 (1991). [Pubmed] Kuwana R, Yamamura S, Ikejiri H, Kobayashi K, Ogasawara N, Asai K, Sadaie Y, Takamatsu H, Watabe K. Bacillus subtilis spoVIF (yjcC) gene, involved in coat assembly and spore resistance. Microbiology (Reading, England) 149:3011-21 (2003). [Pubmed] Henriques A.O, Bryan E.M, Beall B.W, Moran C.P. cse15, cse60, and csk22 are new members of mother-cell-specific sporulation regulons in Bacillus subtilis. Journal of bacteriology 179:389-98 (1997). [Pubmed] Kroos L, Kunkel B, Losick R. Switch protein alters specificity of RNA polymerase containing a compartment-specific sigma factor. Science (New York, N.Y.) 243:526-9 (1989). [Pubmed] Daniel R.A, Errington J. Cloning, DNA sequence, functional analysis and transcriptional regulation of the genes encoding dipicolinic acid synthetase required for sporulation in Bacillus subtilis. Journal of molecular biology 232:468-83 (1993). [Pubmed] Bagyan I, Setlow B, Setlow P. New small, acid-soluble proteins unique to spores of Bacillus subtilis: identification of the coding genes and regulation and function of two of these genes. Journal of bacteriology 180:6704-12 (1998). [Pubmed] Kobayashi K, Hashiguchi K, Yokozeki K, Yamanaka S. Molecular cloning of the transglutaminase gene from Bacillus subtilis and its expression in Escherichia coli. Bioscience, biotechnology, and biochemistry 62:1109-14 (1998). [Pubmed] Takamatsu H, Kodama T, Imamura A, Asai K, Kobayashi K, Nakayama T, Ogasawara N, Watabe K. The Bacillus subtilis yabG gene is transcribed by SigK RNA polymerase during sporulation, and yabG mutant spores have altered coat protein composition. Journal of bacteriology 182:1883-8 (2000). [Pubmed] Fujita M. Identification of new sigma K-dependent promoters using an in vitro transcription system derived from Bacillus subtilis. Gene 237:45-52 (1999). [Pubmed] Kodama T, Takamatsu H, Asai K, Ogasawara N, Sadaie Y, Watabe K. Synthesis and characterization of the spore proteins of Bacillus subtilis YdhD, YkuD, and YkvP, which carry a motif conserved among cell wall binding proteins. Journal of biochemistry 128:655-63 (2000). [Pubmed] Silvaggi J.M, Perkins J.B, Losick R. Genes for small, noncoding RNAs under sporulation control in Bacillus subtilis. Journal of bacteriology 188:532-41 (2006). [Pubmed] Costa T, Steil L, Martins L.O, Völker U, Henriques A.O. Assembly of an oxalate decarboxylase produced under sigmaK control into the Bacillus subtilis spore coat. Journal of bacteriology 186:1462-74 (2004). [Pubmed] Ferguson C.C, Camp A.H, Losick R. gerT, a newly discovered germination gene under the control of the sporulation transcription factor sigmaK in Bacillus subtilis. Journal of bacteriology 189:7681-9 (2007). [Pubmed] |
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