DNA Binding Motif
| Accessions: | UP00271A_1 (UniPROBE 20160601) |
| Names: | MBF subunit p120, Mbp1, Transcription factor MBP1, YDL056W |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 20 |
| Consensus: | krgrhgACGCGTcArrwrma |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.20 0.16 0.25 0.39 k 02 0.27 0.18 0.43 0.12 r 03 0.19 0.22 0.39 0.19 g 04 0.36 0.12 0.36 0.15 r 05 0.27 0.33 0.14 0.25 h 06 0.23 0.07 0.54 0.17 g 07 0.94 0 0.01 0.05 A 08 0 0.99 0 0.01 C 09 0.05 0 0.95 0 G 10 0 0.94 0 0.06 C 11 0 0.01 0.98 0 G 12 0.03 0.01 0 0.96 T 13 0.07 0.66 0.22 0.05 c 14 0.72 0.02 0.21 0.06 A 15 0.26 0.21 0.35 0.18 r 16 0.41 0.20 0.28 0.11 r 17 0.25 0.24 0.14 0.36 w 18 0.25 0.22 0.44 0.09 r 19 0.34 0.40 0.12 0.13 m 20 0.53 0.21 0.14 0.12 a |
| Binding TFs: | UP00271A (Ankyrin repeat, KilA-N domain, Ankyrin repeats (many copies)) |
| Binding Sites: | AAACGCGT AACGCGTC AACGCGTG AACGCGTT ACACGCGT ACGCGTAA ACGCGTAG ACGCGTAT ACGCGTCA ACGCGTCG ACGCGTCT ACGCGTGA ACGCGTTA ACGCGTTC CACGCGTC CACGCGTG GACGCGTA GACGCGTC TACGCGTA ACGCGAAA |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
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