DNA Binding Motif

						

			
Accessions: MA1102.1 (JASPAR 2024)

			
Names: CTCFL
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 14
Consensus: CrsCAGGGGGCrsy
Weblogo: 
PSSM: P0      A      C      G      T
01    627   6915    860    423      C
02   3344   1487   2520   1474      r
03    909   4650   2898    368      s
04    499   6703    535   1088      C
05   8422    166    152     85      A
06     76     93   8596     60      G
07    568    145   8035     77      G
08    266    325   7716    518      G
09    123    179   8447     76      G
10    127    136   8380    182      G
11    117   8625     37     46      C
12   4022    730   3702    371      r
13    714   3772   3448    891      s
14   1329   3392   1810   2294      y
Type: Heterodimer
Binding TFs: Q8NI51 (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Q8NI51
Binding Sites: MA1102.1.1
MA1102.1.10
MA1102.1.11
MA1102.1.12
MA1102.1.13
MA1102.1.14
MA1102.1.15
MA1102.1.16
MA1102.1.17
MA1102.1.18
MA1102.1.19
MA1102.1.2
MA1102.1.20
MA1102.1.3
MA1102.1.4 / MA1102.1.5
MA1102.1.6
MA1102.1.7
MA1102.1.8
MA1102.1.9
			
Publications: Pugacheva EM, Rivero-Hinojosa S, Espinoza CA, Méndez-Catalá CF, Kang S, Suzuki T, Kosaka-Suzuki N, Robinson S, Nagarajan V, Ye Z, Boukaba A, Rasko JE, Strunnikov AV, Loukinov D, Ren B, Lobanenkov VV. Comparative analyses of CTCF and BORIS occupancies uncover two distinct classes of CTCF binding genomic regions. Genome Biol : (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.