DNA Binding Motif

						

			
Accessions: 1b8i_AB (3D-footprint 20231221)

			
Names: PROTEIN (ULTRABITHORAX HOMEOTIC PROTEIN IV)
Organisms: Drosophila melanogaster
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: STRUCTURE OF THE HOMEOTIC UBX/EXD/DNA TERNARY COMPLEX
Length: 11
Consensus: GTGATTTATGG
Weblogo: 
PSSM: P0      A      C      G      T
01      4      4     76     12      G
02      0      0      0     96      T
03      0      0     96      0      G
04     80      0      4     12      A
05      4      4      4     84      T
06      0      4      4     88      T
07      4      4      4     84      T
08     92      0      4      0      A
09      0      0      0     96      T
10      4      4     76     12      G
11      4      4     84      4      G
Type: Heterodimer
Binding TFs: 1b8i_A (Homeobox domain)
1b8i_B (Homeobox domain, Homeobox KN domain)
Binding Sites: 1b8i_C
1b8i_D
			
Publications: Passner J.M, Ryoo H.D, Shen L, Mann R.S, Aggarwal A.K. Structure of a DNA-bound Ultrabithorax-Extradenticle homeodomain complex. Nature 397:714-9 (1999). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.