DNA Binding Motif

						

			
Accessions: RARB_methyl_2 (HT-SELEX2 May2017)

			
Names: RARB
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 16
Consensus: raGGTCAaaAGGTCAh
Weblogo: 
PSSM: P0      A      C      G      T
01   3063    679   2274    785      r
02   4990    410   1810    159      a
03     65     47   6800    227      G
04     50     16   6800   1591      G
05    292    249    805   6800      T
06     67   6800    382    460      C
07   6800     36   1450     22      A
08   4221    934    639   1006      a
09   4216    331   1491    762      a
10   4996    424   1804     64      A
11     64     28   6800    131      G
12     32      8   6800   2048      G
13    293    230    552   6800      T
14     59   6800    329    540      C
15   6800     55   1815     58      A
16   1872   2048   1011   1869      h
Binding TFs: RARB (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains))
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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