DNA Binding Motif

						

			
Accessions: UP00088A_1 (UniPROBE 20160601)

			
Names: Lot1, Plagl1, Pleiomorphic adenoma gene-like 1, Zac1
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 16
Consensus: kyggGGGssCCCckrs
Weblogo: 
PSSM: P0      A      C      G      T
01   0.12   0.24   0.30   0.34      k
02   0.24   0.28   0.19   0.29      y
03   0.20   0.15   0.47   0.18      g
04   0.19   0.11   0.51   0.18      g
05   0.05   0.04   0.84   0.07      G
06   0.13      0   0.85   0.02      G
07      0   0.01   0.96   0.03      G
08      0   0.65   0.34      0      s
09      0   0.34   0.65      0      s
10   0.03   0.96   0.01      0      C
11   0.02   0.85      0   0.13      C
12   0.07   0.84   0.04   0.05      C
13   0.19   0.54   0.06   0.20      c
14   0.21   0.23   0.26   0.30      k
15   0.38   0.19   0.26   0.17      r
16   0.23   0.26   0.30   0.21      s
Binding TFs: UP00088A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
Binding Sites: AAGGGGCC
AGGCCCCC
AGGCCCCT
AGGGCCCC
AGGGGCCC
AGGGGGCC
CGGCCCCC
CGGGCCCC
CGGGGGCC
CGGGGGGC
GAGGCCCC
GAGGGGCC
GCCCCCCA
GGCCCCCA
GGCCCCCC
GGGCCCCA
GGGCCCCC
GGGGCCCA
GGGGGCCA
GGGGGCAC
			
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.