DNA Binding Motif

						

			
Accessions: 4r4e_B (3D-footprint 20231221)

			
Names: HTH-type transcriptional regulator GlnR
Organisms: Bacillus subtilis, strain 168
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of GlnR-DNA complex
Length: 7
Consensus: tTntnAC
Weblogo: 
PSSM: P0      A      C      G      T
01     13     13     16     54      t
02      0      0      0     96      T
03     24     24     24     24      n
04     16     13     13     54      t
05     24     24     24     24      n
06     96      0      0      0      A
07      0     96      0      0      C
Binding TFs: 4r4e_B (MerR family regulatory protein, MerR HTH family regulatory protein)
Binding Sites: 4r4e_D
4r4e_E
			
Publications: Schumacher M.A, Chinnam N.B, Cuthbert B, Tonthat N.K, Whitfill T. Structures of regulatory machinery reveal novel molecular mechanisms controlling B. subtilis nitrogen homeostasis. Genes & development 29:451-64 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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