DNA Binding Motif

						

			
Accessions: 1ea4_DEFG (3D-footprint 20231221)

			
Names: TRANSCRIPTIONAL REPRESSOR COPG
Organisms: Streptococcus agalactiae
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: TRANSCRIPTIONAL REPRESSOR COPG/22bp dsDNA COMPLEX
Length: 17
Consensus: GtTGCAnnnnGTGCAAG
Weblogo: 
PSSM: P0      A      C      G      T
01      8      4     80      4      G
02     12     12      8     64      t
03      0      0      0     96      T
04      0      0     84     12      G
05      0     96      0      0      C
06     96      0      0      0      A
07     24     24     24     24      n
08     24     24     24     24      n
09     24     24     24     24      n
10     24     24     24     24      n
11     12      8     68      8      G
12      0      0      0     96      T
13      0      0     96      0      G
14      0     96      0      0      C
15     76      4     12      4      A
16     76     12      4      4      A
17      0      0     96      0      G
Type: Heterodimer
Binding TFs: 1ea4_D (Ribbon-helix-helix protein, copG family)
1ea4_E (Ribbon-helix-helix protein, copG family)
1ea4_F (Ribbon-helix-helix protein, copG family)
1ea4_G (Ribbon-helix-helix protein, copG family)
Binding Sites: 1ea4_W
1ea4_X
			
Publications: Costa M, Solà M, del Solar G, Eritja R, Hernández-Arriaga A.M, Espinosa M, Gomis-Rüth F.X, Coll M. Plasmid transcriptional repressor CopG oligomerises to render helical superstructures unbound and in complexes with oligonucleotides. Journal of molecular biology 310:403-17 (2001). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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