DNA Binding Motif

						

			
Accessions: 5kkq_D (3D-footprint 20231221)

			
Names: Transcriptional repressor CTCF
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Homo sapiens CCCTC-binding factor (CTCF) ZnF3-7 and DNA complex structure
Length: 14
Consensus: CCAGCAGGGGGCGC
Weblogo: 
PSSM: P0      A      C      G      T
01     11     67      9      9      C
02      0     96      0      0      C
03     87      0      9      0      A
04      0      0     96      0      G
05      0     96      0      0      C
06     96      0      0      0      A
07      0      0     96      0      G
08      0      0     96      0      G
09      9      9     67     11      G
10      0      0     96      0      G
11      0      0     96      0      G
12      0     86      1      9      C
13      0      0     96      0      G
14      1     86      0      9      C
Binding TFs: 5kkq_D (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc-finger domain)
Binding Sites: 5kkq_E
5kkq_F
			
Publications: Hashimoto H, Wang D, Horton JR, Zhang X, Corces VG, Cheng X. Structural Basis for the Versatile and Methylation-Dependent Binding of CTCF to DNA. Mol Cell 66:711-720 (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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