DNA Binding Motif
| Accessions: | MA0693.3 (JASPAR 2024) |
| Names: | Vdr |
| Organisms: | Mus musculus |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 11 |
| Consensus: | ywgAGTTCAtw |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 9080 11090 8420 9952 y 02 11520 7552 7467 12003 w 03 6355 4678 25359 2150 g 04 35948 644 1137 813 A 05 805 599 36028 1110 G 06 978 520 1555 35489 T 07 1685 655 574 35628 T 08 1602 34477 406 2057 C 09 36305 661 826 750 A 10 9051 8330 9421 11740 t 11 11175 7590 9017 10760 w |
| Type: | Heterodimer |
| Binding TFs: | P48281 (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains)) P48281 |
| Binding Sites: | MA0693.3.1 MA0693.3.10 / MA0693.3.13 MA0693.3.11 MA0693.3.12 / MA0693.3.14 MA0693.3.13 / MA0693.3.15 MA0693.3.14 / MA0693.3.17 MA0693.3.15 / MA0693.3.18 MA0693.3.16 / MA0693.3.19 MA0693.3.17 / MA0693.3.20 MA0693.3.18 MA0693.3.19 MA0693.3.2 MA0693.3.20 MA0693.3.3 MA0693.3.4 MA0693.3.5 MA0693.3.6 MA0693.3.7 / MA0693.3.8 MA0693.3.11 / MA0693.3.8 MA0693.3.12 / MA0693.3.9 MA0693.3.16 MA0693.3.10 MA0693.3.6 MA0693.3.7 MA0693.3.9 |
| Publications: | Nishikawa J, Kitaura M, Matsumoto M, Imagawa M, Nishihara T. Difference and similarity of DNA sequence recognized by VDR homodimer and VDR/RXR heterodimer. Nucleic Acids Res 22:2902-7 (1994). [Pubmed] |
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