DNA Binding Motif

						

			
Accessions: RARA_full_2 (HumanTF 1.0)

			
Names: RARA
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 3
Length: 18
Consensus: arrGGTCAwsyrRGGTCA
Weblogo: 
PSSM: P0      A      C      G      T
01   2187    495    321    691      a
02   1769    471   1038     38      r
03   1703     23   1073      1      r
04      0      1   2128      3      G
05      1      0   2092     31      G
06      0     25     13   2448      T
07      7   3823      6     12      C
08   3120      5     18      0      A
09    876    632    115   1154      w
10    233    749   1429    172      s
11    402    693    327   1197      y
12    691     52   1408     64      r
13   2036     49    709      0      R
14      1      1   2084      2      G
15      1      2   2084     55      G
16     13     10     47   2412      T
17      2   3826      2     16      C
18   2990      7     72      0      A
Binding TFs: RARA_full (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains))
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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