DNA Binding Motif

						

			
Accessions: 1c7u_AB (3D-footprint 20231221)

			
Names: MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Complex of the DNA binding core domain of the transcription factor MEF2A with a 20mer oligonucleotide
Length: 16
Consensus: CGncTAnnnnTAgnCG
Weblogo: 
PSSM: P0      A      C      G      T
01      0     96      0      0      C
02      8      8     72      8      G
03     24     24     24     24      n
04     16     56     16      8      c
05      0      0      0     96      T
06     96      0      0      0      A
07     24     24     24     24      n
08     24     24     24     24      n
09     24     24     24     24      n
10     24     24     24     24      n
11      0      0      0     96      T
12     96      0      0      0      A
13     16     16     48     16      g
14     24     24     24     24      n
15      0     96      0      0      C
16      0      0     96      0      G
Binding TFs: 1c7u_A / 1c7u_B (SRF-type transcription factor (DNA-binding and dimerisation domain))
Binding Sites: 1c7u_C / 1c7u_D
			
Publications: Huang K, Louis J.M, Donaldson L, Lim F.L, Sharrocks A.D, Clore G.M. Solution structure of the MEF2A-DNA complex: structural basis for the modulation of DNA bending and specificity by MADS-box transcription factors. The EMBO journal 19:2615-28 (2000). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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