DNA Binding Motif
| Accessions: | EEAD0056 (EEADannot 2023-12-22) |
| Names: | AtDUO1 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | EEADannot 2023-12-22 1 1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed] |
| Length: | 8 |
| Consensus: | rrCGGTTA |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.442 0.003 0.533 0.022 r 02 0.675 0.003 0.316 0.006 r 03 0.002 0.991 0.002 0.005 C 04 0.008 0.157 0.833 0.002 G 05 0.003 0.002 0.992 0.003 G 06 0.004 0.003 0.002 0.991 T 07 0.010 0.010 0.001 0.979 T 08 0.843 0.009 0.085 0.065 A |
| Binding TFs: | DUO1 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) |
| Publications: | Higo A, Kawashima T, Borg M, Zhao M, López-Vidriero I, Sakayama H, Montgomery SA, Sekimoto H, Hackenberg D, Shimamura M, Nishiyama T, Sakakibara K, Tomita Y, Togawa T, Kunimoto K, Osakabe A, Suzuki Y, Yamato KT, Ishizaki K, Nishihama R, Kohchi T, Franco-Zorrilla JM, Twell D, Berger F, Araki T. Transcription factor DUO1 generated by neo-functionalization is associated with evolution of sperm differentiation in plants. Nat Commun 9:5283 (2018). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.