DNA Binding Motif

						

			
Accessions: 1rzr_AD (3D-footprint 20231221)

			
Names: Glucose-resistance amylase regulator
Organisms: Bacillus megaterium
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: crystal structure of transcriptional regulator-phosphoprotein-DNA complex
Length: 14
Consensus: TGTnAGCGCTnTCA
Weblogo: 
PSSM: P0      A      C      G      T
01      3      3      3     87      T
02      0      0     96      0      G
03      3     15     12     66      T
04     24     24     24     24      n
05     96      0      0      0      A
06      3      3     87      3      G
07      0     96      0      0      C
08      0      0     96      0      G
09     12     66     15      3      C
10      3      3     15     75      T
11     24     24     24     24      n
12      3      3      3     87      T
13      0     96      0      0      C
14     87      3      3      3      A
Binding TFs: 1rzr_A / 1rzr_D (Bacterial regulatory proteins, lacI family, Periplasmic binding proteins and sugar binding domain of LacI family, Periplasmic binding protein-like domain, Periplasmic binding protein domain)
Binding Sites: 1rzr_B
1rzr_E
			
Publications: Schumacher M.A, Allen G.S, Diel M, Seidel G, Hillen W, Brennan R.G. Structural basis for allosteric control of the transcription regulator CcpA by the phosphoprotein HPr-Ser46-P. Cell 118:731-41 (2004). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.