DNA Binding Motif
| Accessions: | MA1599.1 (JASPAR 2024) |
| Names: | ZNF682 |
| Organisms: | Homo sapiens |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ChIP-seq |
| Length: | 16 |
| Consensus: | crGGCyAAGCCCCwrt |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 205 423 214 216 c 02 304 234 349 171 r 03 110 85 774 89 G 04 103 42 877 36 G 05 100 795 105 58 C 06 48 597 55 358 y 07 953 72 20 13 A 08 999 31 22 6 A 09 6 7 1038 7 G 10 13 999 13 33 C 11 5 1033 9 11 C 12 7 1034 10 7 C 13 66 896 32 64 C 14 367 117 118 456 w 15 324 254 300 180 r 16 192 260 194 412 t |
| Type: | Heterodimer |
| Binding TFs: | O95780 (Zinc finger, C2H2 type, KRAB box, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger) O95780 |
| Binding Sites: | MA1599.1.1 MA1599.1.10 / MA1599.1.7 MA1599.1.11 MA1599.1.12 MA1599.1.13 MA1599.1.14 / MA1599.1.8 MA1599.1.15 MA1599.1.16 / MA1599.1.9 MA1599.1.17 MA1599.1.18 MA1599.1.10 / MA1599.1.19 MA1599.1.2 MA1599.1.20 MA1599.1.3 MA1599.1.4 MA1599.1.5 MA1599.1.6 MA1599.1.5 / MA1599.1.7 MA1599.1.6 / MA1599.1.8 MA1599.1.9 MA1599.1.11 MA1599.1.12 MA1599.1.13 MA1599.1.14 MA1599.1.15 MA1599.1.16 MA1599.1.17 MA1599.1.18 MA1599.1.19 MA1599.1.20 |
| Publications: | Isakova A, Groux R, Imbeault M, Rainer P, Alpern D, Dainese R, Ambrosini G, Trono D, Bucher P, Deplancke B. SMiLE-seq identifies binding motifs of single and dimeric transcription factors. Nat Methods 14:316-322 (2017). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.