DNA Binding Motif

						

			
Accessions: MA0269.1 (JASPAR 2024)

			
Names: AFT1
Organisms: Saccharomyces cerevisiae
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 21
Consensus: ttacatAkTGCACCCsmwwkg
Weblogo: 
PSSM: P0      A      C      G      T
01    106    205    231    456      t
02    155    249    220    374      t
03    362    197    221    218      a
04    179    396    222    200      c
05    426    231    154    187      a
06    136     78    142    641      t
07    716     25     31    226      A
08    145     31    288    535      k
09     34     47     39    878      T
10    160     10    812     16      G
11     10    966     11     10      C
12    961      9     15     14      A
13      8    972      9     10      C
14     25    955      2     16      C
15     19    740     13    225      C
16    181    257    494     65      s
17    265    252    241    240      m
18    287    155    183    373      w
19    276    180     68    474      w
20    123    225    357    292      k
21    154    236    458    150      g
Type: Heterodimer
Binding TFs: P22149 (Transcription factor AFT)
P22149
			
Publications: Newburger D.E, Bulyk M.L. UniPROBE: an online database of protein binding microarray data on protein-DNA interactions. Nucleic acids research 37:D77-82 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.