DNA Binding Motif

						

			
Accessions: MA1915.2 (JASPAR 2024)

			
Names: SoxB1
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 11
Consensus: AwtdwcATTGT
Weblogo: 
PSSM: P0      A      C      G      T
01    711     66     71    152      A
02    517     84     99    300      w
03    184    101    170    546      t
04    282    148    297    273      d
05    301    247    198    254      w
06    131    672     37    160      c
07    973      5      8     14      A
08    124     10     11    855      T
09      8      6      7    979      T
10     42     30    913     14      G
11     77     32     30    861      T
Type: Heterodimer
Binding TFs: Q4H2S3 (HMG (high mobility group) box, Domain of unknown function (DUF1898), SOX transcription factor)
Q4H2S3
			
Publications: Chen WC, Pauls S, Bacha J, Elgar G, Loose M, Shimeld SM. Dissection of a Ciona regulatory element reveals complexity of cross-species enhancer activity. Dev Biol 390:261-72 (2014). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.