DNA Binding Motif

						

			
Accessions: NANOG_MOUSE.H10MO.A|M01223 (HOCOMOCO 10)

			
Names: Nanog
Organisms: Mus musculus
Libraries: HOCOMOCO 10 1
1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]
Notes: NK-related factors{3.1.2}; NANOG{3.1.2.12}
Length: 17
Consensus: kyywTTswtATGywAAt
Weblogo: 
PSSM: P0      A      C      G      T
01     40    105    132    223      k
02     21    268     85    126      y
03     32    264     15    189      y
04    211     18     14    257      w
05      4     22     21    453      T
06     37      9     15    439      T
07     59    136    267     38      s
08    161      4     12    323      w
09    121    105    109    165      t
10    366     29     25     80      A
11     42      6     20    432      T
12     17      6    355    122      G
13     17    267     70    146      y
14    271     53     21    155      w
15    354      8     85     53      A
16    436     25     17     22      A
17    105     47     76    272      t
Binding TFs: NANOG_MOUSE (Homeobox domain, Homeodomain leucine-zipper encoding, Homez)
			
Publications: Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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