DNA Binding Motif

						

			
Accessions: GCM1_ETV1 (HumanTF2 1.0)

			
Names: GCM1_ETV1
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 15
Consensus: rtrsGGGCGGAwGkk
Weblogo: 
PSSM: P0      A      C      G      T
01    316     65    157     17      r
02    125     74    107    474      t
03    231     47    242      8      r
04     35    140    200     98      s
05     31     11    434      0      G
06      0      0    474      0      G
07      0      2    474      0      G
08     29    474      0      4      C
09      0      2    474      7      G
10      8      5    474      1      G
11    474      0     42     51      A
12    474     46     96    393      w
13     72     44    474      6      G
14     60    200    337    474      k
15     71     48    196    158      k
Type: Heterodimer
Binding TFs: ETV1_TF2 (Ets-domain)
GCM1_TF1 (GCM motif protein)
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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