DNA Binding Motif

						

			
Accessions: MA1793.1 (JASPAR 2024)

			
Names: NID1
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 10
Consensus: cttATCyrtw
Weblogo: 
PSSM: P0      A      C      G      T
01    195 387.94  244.9    173      c
02    116    225 28.951    630      t
03    132    103     93    673      t
04    962   3.89     14     20      A
05     18     36     15    931      T
06     23    933     15     29      C
07     43 636.52     69    251      y
08    412    102    282    205      r
09 245.25    233    222    300      t
10    368    162    159 310.65      w
Type: Heterodimer
Binding TFs: Q84TG2 (Myb-like DNA-binding domain)
Q84TG2
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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