DNA Binding Motif

						

			
Accessions: 1gd2_EF (3D-footprint 20231221)

			
Names: TRANSCRIPTION FACTOR PAP1
Organisms: Schizosaccharomyces pombe, Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNA
Length: 12
Consensus: GGTTACGTAACC
Weblogo: 
PSSM: P0      A      C      G      T
01      6      6     78      6      G
02      6      6     78      6      G
03      0      0      0     96      T
04      0      0      0     96      T
05     78      6      6      6      A
06      0     96      0      0      C
07      0      0     96      0      G
08      6      6      6     78      T
09     96      0      0      0      A
10     96      0      0      0      A
11      0     96      0      0      C
12      6     78      6      6      C
Type: Heterodimer
Binding TFs: 1gd2_E (bZIP transcription factor)
1gd2_F (bZIP transcription factor)
Binding Sites: 1gd2_A / 1gd2_B
			
Publications: Fujii Y, Shimizu T, Toda T, Yanagida M, Hakoshima T. Structural basis for the diversity of DNA recognition by bZIP transcription factors. Nature structural biology 7:889-93 (2000). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.