DNA Binding Motif

						

			
Accessions: 6sdg_AB (3D-footprint 20231221)

			
Names: Auxin response factor
Organisms: Marchantia aquatica, Marchantia polymorpha (Liverwort)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of the DNA binding domain of M. polymorpha Auxin Response Factor 2 (MpARF2) in complex with High Affinity DNA
Length: 20
Consensus: tTGTcGGCnnnnnGCcnACA
Weblogo: 
PSSM: P0      A      C      G      T
01     15     16     15     50      t
02      0      0      0     96      T
03      0      0     96      0      G
04      0      0      0     96      T
05     11     60     15     10      c
06      0      0     96      0      G
07      0      0     96      0      G
08      0     96      0      0      C
09     24     24     24     24      n
10     24     24     24     24      n
11     24     24     24     24      n
12     24     24     24     24      n
13     24     24     24     24      n
14      0      0     96      0      G
15      0     96      0      0      C
16     15     65     10      6      c
17     24     24     24     24      n
18     80      5      6      5      A
19      0     96      0      0      C
20     96      0      0      0      A
Type: Heterodimer
Binding TFs: 6sdg_A (B3 DNA binding domain, Auxin response factor)
6sdg_B (B3 DNA binding domain, Auxin response factor)
Binding Sites: 6sdg_C
6sdg_D
			
Publications: Kato H, Mutte SK, Suzuki H, Crespo I, Das S, Radoeva T, Fontana M, Yoshitake Y, Hainiwa E, van den Berg W, Lindhoud S, Ishizaki K, Hohlbein J, Borst JW, Boer DR, Nishihama R, Kohchi T, Weijers D. Design principles of a minimal auxin response system. Nat Plants 6:473-482 (2020). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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