DNA Binding Motif

						

			
Accessions: SNAI3_2 (HT-SELEX2 May2017), MA1559.1 (JASPAR 2024)

			
Names: SNAI3
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1, JASPAR 2024 2
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: HT-SELEX
Length: 10
Consensus: arCAGGTGya
Weblogo: 
PSSM: P0      A      C      G      T
01   2952    661   1525   1110      a
02   3917      0   2331    183      r
03     23   6248      0     35      C
04   6248      0     34      3      A
05    118     29   6248     43      G
06      0     18   6248      0      G
07      0     12     28   6248      T
08     94      0   6248     30      G
09    432   6248   1701   3161      y
10   4680    688   1569    553      a
Type: Heterodimer
Binding TFs: Q3KNW1 / SNAI3 (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
Q3KNW1
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]


Bradley CK, Norton CR, Chen Y, Han X, Booth CJ, Yoon JK, Krebs LT, Gridley T. The snail family gene snai3 is not essential for embryogenesis in mice. PLoS One : (2013). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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