DNA Binding Motif

						

			
Accessions: 3hdd_AB (3D-footprint 20231221)

			
Names: ENGRAILED HOMEODOMAIN
Organisms: Drosophila melanogaster
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: ENGRAILED HOMEODOMAIN DNA COMPLEX
Length: 12
Consensus: GTAATAACnTTA
Weblogo: 
PSSM: P0      A      C      G      T
01      5     10     71     10      G
02      0      0      0     96      T
03     81      5      5      5      A
04     96      0      0      0      A
05      0      0      0     96      T
06     80      6      5      5      A
07     96      0      0      0      A
08      5     75     10      6      C
09     24     24     24     24      n
10      0      0      0     96      T
11      5      6      5     80      T
12     91      0      5      0      A
Type: Heterodimer
Binding TFs: 3hdd_A (Homeobox domain)
3hdd_B (Homeobox domain)
Binding Sites: 3hdd_C
3hdd_D
			
Publications: Fraenkel E, Rould M.A, Chambers K.A, Pabo C.O. Engrailed homeodomain-DNA complex at 2.2 A resolution: a detailed view of the interface and comparison with other engrailed structures. Journal of molecular biology 284:351-61 (1998). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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