DNA Binding Motif
| Accessions: | MA2440.1 (JASPAR 2024) |
| Names: | SPL2B |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 13 |
| Consensus: | GCGGTAsTACcGc |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 10879 9544 99125 3619 G 02 4009 105622 3129 10407 C 03 8372 2311 111085 1399 G 04 1415 590 120883 279 G 05 3290 4776 382 114719 T 06 118542 279 1652 2694 A 07 298 62408 60201 260 s 08 2248 1047 903 118969 T 09 117084 784 3257 2042 A 10 11301 89013 16402 6451 C 11 13307 77157 12094 20609 c 12 21803 8387 85834 7143 G 13 11450 76575 17878 17264 c |
| Binding Sites: | MA2440.1.16 MA2440.1.15 MA2440.1.14 MA2440.1.13 MA2440.1.17 MA2440.1.18 MA2440.1.10 / MA2440.1.11 / MA2440.1.2 / MA2440.1.3 / MA2440.1.4 / MA2440.1.6 / MA2440.1.9 MA2440.1.1 MA2440.1.12 MA2440.1.19 MA2440.1.20 MA2440.1.5 MA2440.1.7 MA2440.1.8 |
| Publications: | Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.