DNA Binding Motif

						

			
Accessions: MA2335.1 (JASPAR 2024)

			
Names: ZNF558
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 29
Consensus: AwtTGATGAAAGACATrAAtmtACAgATy
Weblogo: 
PSSM: P0      A      C      G      T
01    540     22     52     41      A
02    190     28     71    366      w
03     75    114     40    426      t
04     62     23     67    503      T
05    129      9    509      8      G
06    504     19    110     22      A
07     16     33     10    596      T
08     53      8    555     39      G
09    619     10     18      8      A
10    605     31      9     10      A
11    609      1     43      2      A
12     25      5    609     16      G
13    602     11     33      9      A
14     16    519      7    113      C
15    643      2      5      5      A
16      3     56      9    587      T
17    251     91    249     64      r
18    606     16     18     15      A
19    619     11     16      9      A
20     78    139     35    403      t
21    208    362     15     70      m
22      2    146     62    445      t
23    590     12     27     26      A
24     75    532     10     38      C
25    643      0      5      7      A
26    149    150    258     98      g
27    548     10     55     42      A
28     19     35     14    587      T
29     65    320     25    245      y
Binding TFs: Q96NG5
Binding Sites: MA2335.1.1
MA2335.1.10
MA2335.1.11
MA2335.1.12
MA2335.1.13
MA2335.1.14
MA2335.1.15
MA2335.1.16
MA2335.1.17
MA2335.1.18
MA2335.1.19
MA2335.1.2
MA2335.1.20
MA2335.1.3
MA2335.1.4
MA2335.1.5
MA2335.1.6
MA2335.1.7
MA2335.1.8
MA2335.1.9
			
Publications: Imbeault M, Helleboid PY, Trono D. KRAB zinc-finger proteins contribute to the evolution of gene regulatory networks. Nature 543:550-554 (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.