DNA Binding Motif

						

			
Accessions: MA1885.1 (JASPAR 2024)

			
Names: Hox4
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 20
Consensus: wwwwwraTmATTAwykwwww
Weblogo: 
PSSM: P0      A      C      G      T
01    298    194    189    319      w
02    321    191    196    292      w
03    339    194    206    262      w
04    346    184    206    264      w
05    271    228    218    283      w
06    274    224    291    212      r
07    334    197    246    223      a
08     48     78     33    841      T
09    323    598     42     38      m
10    934     10     46     10      A
11     13     12      8    968      T
12     27     29     13    931      T
13    936     16     17     30      A
14    350    184    209    257      w
15    171    292    225    311      y
16    249    202    276    273      k
17    281    220    211    288      w
18    263    224    205    307      w
19    286    217    193    304      w
20    294    205    190    311      w
Type: Heterodimer
Binding TFs: Q4H3C6 (Homeobox domain)
Q4H3C6
			
Publications: José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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