DNA Binding Motif

						

			
Accessions: MA1963.1 (JASPAR 2024)

			
Names: SATB1
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 13
Consensus: wwwCTAATAAhww
Weblogo: 
PSSM: P0      A      C      G      T
01  11611   4807   4675  13131      w
02  11209   4284   5143  13588      w
03  11402   5320   7922   9580      w
04    262  33122    140    700      C
05    492    195     37  33500      T
06  33670    164    221    169      A
07  32708    115    120   1281      A
08    288    128    123  33685      T
09  32009    485    889    841      A
10  30660    881   1071   1612      A
11   8716  13196   2582   9730      h
12  12175   4803   3786  13460      w
13  13173   4715   5595  10741      w
Type: Heterodimer
Binding TFs: Q01826 (Homeobox domain, CUT domain)
Q01826
Binding Sites: MA1963.1.1
MA1963.1.10 / MA1963.1.9
MA1963.1.11
MA1963.1.12
MA1963.1.13
MA1963.1.14
MA1963.1.15
MA1963.1.14 / MA1963.1.16
MA1963.1.15 / MA1963.1.17
MA1963.1.16 / MA1963.1.18
MA1963.1.17 / MA1963.1.19
MA1963.1.2
MA1963.1.18 / MA1963.1.20
MA1963.1.3
MA1963.1.4
MA1963.1.5
MA1963.1.6
MA1963.1.7
MA1963.1.8
MA1963.1.10
MA1963.1.19
MA1963.1.20
MA1963.1.9
			
Publications: Purbey P. K., Singh S., Kumar P. P., Mehta S., Ganesh K. N., Mitra D., Galande S. PDZ domain-mediated dimerization and homeodomain-directed specificity are required for high-affinity DNA binding by SATB1.. Nucleic Acids Res. 36:2107-2122 (2008). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.