DNA Binding Motif
| Accessions: | 2fio_AB (3D-footprint 20231221) |
| Names: | Late genes activator |
| Organisms: | Bacillus phage phi29 |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Description: | Phage phi29 transcription regulator p4-DNA complex |
| Length: | 31 |
| Consensus: | AaCtnnnnnnnnnnnnnnnnnnnnnnnTGTT |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 96 0 0 0 A 02 64 16 16 0 a 03 0 96 0 0 C 04 16 16 16 48 t 05 24 24 24 24 n 06 24 24 24 24 n 07 24 24 24 24 n 08 24 24 24 24 n 09 24 24 24 24 n 10 24 24 24 24 n 11 24 24 24 24 n 12 24 24 24 24 n 13 24 24 24 24 n 14 24 24 24 24 n 15 24 24 24 24 n 16 24 24 24 24 n 17 24 24 24 24 n 18 24 24 24 24 n 19 24 24 24 24 n 20 24 24 24 24 n 21 24 24 24 24 n 22 24 24 24 24 n 23 24 24 24 24 n 24 24 24 24 24 n 25 24 24 24 24 n 26 24 24 24 24 n 27 24 24 24 24 n 28 0 0 0 96 T 29 0 0 96 0 G 30 0 0 0 96 T 31 0 0 0 96 T |
| Type: | Heterodimer |
| Binding TFs: | 2fio_A (Phi-29-like late genes activator (early protein GP4)) 2fio_B (Phi-29-like late genes activator (early protein GP4)) |
| Binding Sites: | 2fio_C 2fio_D |
| Publications: | Badia D, Camacho A, Pérez-Lago L, Escandón C, Salas M, Coll M. The structure of phage phi29 transcription regulator p4-DNA complex reveals an N-hook motif for DNA. Molecular cell 22:73-81 (2006). [Pubmed] |
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