DNA Binding Motif

						

			
Accessions: UN0394.1 (JASPAR 2024)

			
Names: AtPLATZ6
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 15
Consensus: rGAAgmTTCTAGAAg
Weblogo: 
PSSM: P0      A      C      G      T
01    580     70    308 41.667      r
02      5  6.667    988      0      G
03    968      5  3.333 23.333      A
04    922  8.333 16.667 53.333      A
05     75    238    550    137      g
06    288    337    188    187      m
07 98.333 41.667 11.667    848      T
08 13.333      0  6.667    980      T
09  3.333    985      5  6.667      C
10      0    142 46.667    812      T
11    778 36.667    183  1.667      A
12  1.667     10    988      0      G
13    960  6.667  8.333     25      A
14    700 56.667    110    133      A
15    248    187    378    187      g
Type: Heterodimer
Binding TFs: A8MQN6 (PLATZ transcription factor)
A8MQN6
			
	
			


			

				

				
				
				
				

			

			

		

	
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