DNA Binding Motif

						

			
Accessions: RARB_methyl_3 (HT-SELEX2 May2017)

			
Names: RARB
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 14
Consensus: raGGTCrTGACCTy
Weblogo: 
PSSM: P0      A      C      G      T
01   1304    348   1039    343      r
02   2195    304    839    104      a
03     76    103   3034    171      G
04     32     48   3034    799      G
05    156    212    393   3034      T
06     13   3034     64     64      C
07   1433      1   1601     15      r
08     13    687      4   3034      T
09     74     53   3034      9      G
10   3034    205    138    166      A
11    634   3034     23     12      C
12     96   3034     34     49      C
13     66    700    258   2334      T
14    347    866    328   1493      y
Binding TFs: RARB (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains))
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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