DNA Binding Motif

Accessions: MA1329.2 (JASPAR 2024)
Names: ZHD1
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 13
Consensus: wwAyTAATTAAtw
Weblogo:
PSSM: P0 A C G T
01 834 351 309 978 w
02 967 422 333 750 w
03 1813 246 193 220 A
04 386 1155 193 738 y
05 47 24 9 2392 T
06 2412 14 26 20 A
07 2417 15 18 22 A
08 25 29 9 2409 T
09 19 43 12 2398 T
10 2382 14 25 51 A
11 2233 73 60 106 A
12 562 402 473 1035 t
13 691 423 370 988 w
Type: Heterodimer
Binding TFs: Q9SB61 (ZF-HD protein dimerisation region)
Q9SB61
Binding Sites: MA1329.2.1
MA1329.2.10
MA1329.2.11 / MA1329.2.8
MA1329.2.12
MA1329.2.13 / MA1329.2.9
MA1329.2.10 / MA1329.2.14
MA1329.2.11 / MA1329.2.15
MA1329.2.12 / MA1329.2.16
MA1329.2.13 / MA1329.2.17
MA1329.2.15 / MA1329.2.18
MA1329.2.16 / MA1329.2.19
MA1329.2.2
MA1329.2.20
MA1329.2.2 / MA1329.2.3
MA1329.2.4
MA1329.2.5
MA1329.2.5 / MA1329.2.6
MA1329.2.6 / MA1329.2.7
MA1329.2.8
MA1329.2.7 / MA1329.2.9
MA1329.2.14
MA1329.2.17
MA1329.2.18
MA1329.2.19
MA1329.2.20
MA1329.2.3
MA1329.2.4
Publications: Johannesson H., Wang Y., Engstrom P. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol. Biol. 45:63-73 (2001). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.