DNA Binding Motif

						

			
Accessions: MA2013.1 (JASPAR 2024)

			
Names: ERF115
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 15
Consensus: cdyCGCCGCCGCmrc
Weblogo: 
PSSM: P0      A      C      G      T
01    198    458     73    176      c
02    237    139    300    229      d
03     53    344     53    455      y
04     43    815     15     32      C
05     56      8    715    126      G
06     13    839     35     18      C
07     23    866      6     10      C
08     14      1    880     10      G
09      4    865     12     24      C
10     13    880      0     12      C
11     44      3    840     18      G
12     31    698     55    121      C
13    480    286     42     97      m
14    293     71    375    166      r
15    174    418     92    221      c
Type: Heterodimer
Binding TFs: Q9LY29 (AP2 domain)
Q9LY29
Binding Sites: MA2013.1.4
MA2013.1.1
MA2013.1.10
MA2013.1.11
MA2013.1.12
MA2013.1.13
MA2013.1.14
MA2013.1.15
MA2013.1.16
MA2013.1.17
MA2013.1.18
MA2013.1.19
MA2013.1.2
MA2013.1.20
MA2013.1.3
MA2013.1.5
MA2013.1.6
MA2013.1.7
MA2013.1.8
MA2013.1.9
			
Publications: Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.