DNA Binding Motif

						

			
Accessions: 1xs9_A (3D-footprint 20231221)

			
Names: Multiple antibiotic resistance protein marA
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: A MODEL OF THE TERNARY COMPLEX FORMED BETWEEN MARA, THE ALPHA-CTD OF RNA POLYMERASE AND DNA
Length: 16
Consensus: tGCCannnnnTGnnAA
Weblogo: 
PSSM: P0      A      C      G      T
01     10     17      8     61      t
02      0      0     96      0      G
03      0     96      0      0      C
04      0     96      0      0      C
05     61     17      8     10      a
06     24     24     24     24      n
07     24     24     24     24      n
08     24     24     24     24      n
09     24     24     24     24      n
10     24     24     24     24      n
11      0      0      0     96      T
12      0      0     96      0      G
13     24     24     24     24      n
14     24     24     24     24      n
15     69      8     11      8      A
16     96      0      0      0      A
Binding TFs: 1xs9_A (Bacterial regulatory helix-turn-helix proteins, AraC family, Helix-turn-helix domain)
Binding Sites: 1xs9_B
1xs9_C
			
Publications: Dangi B, Gronenborn A.M, Rosner J.L, Martin R.G. Versatility of the carboxy-terminal domain of the alpha subunit of RNA polymerase in transcriptional activation: use of the DNA contact site as a protein contact site for MarA. Molecular microbiology 54:45-59 (2004). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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