DNA Binding Motif
| Accessions: | SigW_2 (DBTBS 1.0) |
| Names: | SigW_2 |
| Organisms: | Bacillus subtilis |
| Libraries: | DBTBS 1.0 1 1 Sierro N, Makita Y, de Hoon M, Nakai K. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic acids research 36:D93-6 (2008). [Pubmed] |
| Length: | 6 |
| Consensus: | CGTmTW |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.04 0.96 0 0 C 02 0 0 1 0 G 03 0 0 0 1 T 04 0.58 0.42 0 0 m 05 0 0 0 0.99 T 06 0.68 0 0 0.32 W |
| Binding TFs: | SigW (Sigma-70 region 2 , Sigma-70, region 4, ECF sigma factor, Sigma-70, region 4) |
| Binding Sites: | abh_1 divIC_1 pbpE_3 pbpX_1 pspA sigW_2 sppA xpaC ybfO yceC_2 ydbS yeaA yfhL yjbC_2 yjoB yknW_2 yndN yoaF yoaG yobJ yozO yqeZ yqjL_1 yrhH_1 ysdB ythP yuaF yvlA_2 ywaC ywbN_1 ywnJ_2 ywrE yxjI yxzE_2 |
| Publications: | Huang X, Helmann J.D. Identification of target promoters for the Bacillus subtilis sigma X factor using a consensus-directed search. Journal of molecular biology 279:165-73 (1998). [Pubmed] Huang X, Fredrick K.L, Helmann J.D. Promoter recognition by Bacillus subtilis sigmaW: autoregulation and partial overlap with the sigmaX regulon. Journal of bacteriology 180:3765-70 (1998). [Pubmed] Cao M, Wang T, Ye R, Helmann J.D. Antibiotics that inhibit cell wall biosynthesis induce expression of the Bacillus subtilis sigma(W) and sigma(M) regulons. Molecular microbiology 45:1267-76 (2002). [Pubmed] Cao M, Helmann J.D. The Bacillus subtilis extracytoplasmic-function sigmaX factor regulates modification of the cell envelope and resistance to cationic antimicrobial peptides. Journal of bacteriology 186:1136-46 (2004). [Pubmed] Antelmann H, Scharf C, Hecker M. Phosphate starvation-inducible proteins of Bacillus subtilis: proteomics and transcriptional analysis. Journal of bacteriology 182:4478-90 (2000). [Pubmed] Huang X, Gaballa A, Cao M, Helmann J.D. Identification of target promoters for the Bacillus subtilis extracytoplasmic function sigma factor, sigma W. Molecular microbiology 31:361-71 (1999). [Pubmed] Popham D.L, Setlow P. Cloning, nucleotide sequence, and regulation of the Bacillus subtilis pbpE operon, which codes for penicillin-binding protein 4* and an apparent amino acid racemase. Journal of bacteriology 175:2917-25 (1993). [Pubmed] Wiegert T, Homuth G, Versteeg S, Schumann W. Alkaline shock induces the Bacillus subtilis sigma(W) regulon. Molecular microbiology 41:59-71 (2001). [Pubmed] Cao M, Kobel P.A, Morshedi M.M, Wu M.F, Paddon C, Helmann J.D. Defining the Bacillus subtilis sigma(W) regulon: a comparative analysis of promoter consensus search, run-off transcription/macroarray analysis (ROMA), and transcriptional profiling approaches. Journal of molecular biology 316:443-57 (2002). [Pubmed] Cao M, Bernat B.A, Wang Z, Armstrong R.N, Helmann J.D. FosB, a cysteine-dependent fosfomycin resistance protein under the control of sigma(W), an extracytoplasmic-function sigma factor in Bacillus subtilis. Journal of bacteriology 183:2380-3 (2001). [Pubmed] |
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