DNA Binding Motif

						

			
Accessions: GCM1_ETV7_1 (HumanTF2 1.0)

			
Names: GCM1_ETV7
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 23
Consensus: atrmGGGCGGAArydyTTCCbby
Weblogo: 
PSSM: P0      A      C      G      T
01   1620    407    472    162      a
02    631    487    515   2336      t
03    918    240   1046     39      r
04    901   1031    435    352      m
05    156    138   1432    154      G
06    148    253   1696    216      G
07     71     75   1742    187      G
08    367   3056    155    123      C
09      0      1   1736      0      G
10      5     15   1745     18      G
11   3159     19      0    107      A
12   3135    347      5    254      A
13    694    303   1512    101      r
14    322    911    203   1325      y
15    894    318    665    662      d
16    158   1093    347   1049      y
17    432      7    421   2090      T
18    263      0     12   2655      T
19      9   3298     67     52      C
20     39   3131      2    265      C
21    111    674    857    694      b
22    153    562    904    549      b
23    386    695    313   1197      y
Type: Heterodimer
Binding TFs: GCM1_TF1 (GCM motif protein)
ETV7_TF1 / ETV7_TF2 (Ets-domain, Sterile alpha motif (SAM)/Pointed domain)
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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