DNA Binding Motif

						

			
Accessions: MA0303.1 (JASPAR 2024)

			
Names: GCN4
Organisms: Saccharomyces cerevisiae
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 21
Consensus: crwdrkrTGAsTCAymcwtmw
Weblogo: 
PSSM: P0      A      C      G      T
01    218    295    245    240      c
02    371    217    268    142      r
03    362    213    150    273      w
04    282    119    325    272      d
05    275    177    316    230      r
06    169    140    365    325      k
07    535     35    413     15      r
08     11      8      6    973      T
09      2      5    934     57      G
10    968     13      4     13      A
11      2    433    562      1      s
12     13      4     13    968      T
13     57    934      5      2      C
14    973      6      8     11      A
15     15    413     35    535      y
16    376    290    131    202      m
17    207    354    194    244      c
18    284    216    202    296      w
19    226    234    177    361      t
20    254    329    232    183      m
21    337    169    195    297      w
Type: Heterodimer
Binding TFs: P03069 (bZIP transcription factor, Basic region leucine zipper)
P03069
			
Publications: Newburger D.E, Bulyk M.L. UniPROBE: an online database of protein binding microarray data on protein-DNA interactions. Nucleic acids research 37:D77-82 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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