DNA Binding Motif

Accessions: M0028 (AthalianaCistrome v4_May2016)
Names: AT1G12630.ampDAP, T00109;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 16
Consensus: kwwwtTGTCGGYarar
Weblogo:
PSSM: P0 A C G T
01 146 96 196 160 k
02 202 105 114 177 w
03 186 120 81 211 w
04 213 62 95 228 w
05 117 84 146 251 t
06 7 51 2 538 T
07 0 0 598 0 G
08 17 0 1 580 T
09 0 598 0 0 C
10 0 0 598 0 G
11 3 0 595 0 G
12 0 410 1 187 Y
13 399 38 143 18 a
14 311 34 205 48 r
15 270 137 104 87 a
16 183 99 172 144 r
Binding TFs: T00109 (AP2 domain)
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

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