DNA Binding Motif

						

			
Accessions: MA0060.3 (JASPAR 2024)

			
Names: NFYA
Organisms: Homo sapiens, Oryctolagus cuniculus, Rattus norvegicus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 11
Consensus: rrCCAATCAgm
Weblogo: 
PSSM: P0      A      C      G      T
01   1897    757   1815    356      r
02   1924    404   1858    639      r
03     23   4657     34    111      C
04     31   4713     28     53      C
05   4683     29     17     96      A
06   4584     94    124     23      A
07     37    132     11   4645      T
08    166   4215    319    125      C
09   4088    213    489     35      A
10    611   1131   2713    370      g
11   1855   1369    887    714      m
Type: Heterodimer
Binding TFs: P23511 (CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B)
P23511
Binding Sites: MA0060.3.1
MA0060.3.10
MA0060.3.11
MA0060.3.12
MA0060.3.13
MA0060.3.14
MA0060.3.15
MA0060.3.16
MA0060.3.17
MA0060.3.18
MA0060.3.19 / MA0060.3.2
MA0060.3.20
MA0060.3.3
MA0060.3.4
MA0060.3.5
MA0060.3.6
MA0060.3.7
MA0060.3.8
MA0060.3.9
			
Publications: Mantovani R. A survey of 178 NF-Y binding CCAAT boxes. Nucleic Acids Res. 26:1135-1143 (1998). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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