DNA Binding Motif

						

			
Accessions: MA0078.3 (JASPAR 2024)

			
Names: Sox17
Organisms: Mus musculus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 10
Consensus: agAACAATGG
Weblogo: 
PSSM: P0      A      C      G      T
01   7836    957   1889   1605      a
02   2720    885   6638   2044      g
03   8708   1111   1561    907      A
04  11818    124    163    182      A
05    271  11241    490    285      C
06  11906    140    105    136      A
07  11634    258    281    114      A
08   1005    138    189  10955      T
09   1324    251  10241    471      G
10   1224   1012   9181    870      G
Type: Heterodimer
Binding TFs: Q61473 (HMG (high mobility group) box, Domain of unknown function (DUF1898), Sox C-terminal transactivation domain)
Q61473
Binding Sites: MA0078.3.1
MA0078.3.10
MA0078.3.11
MA0078.3.12
MA0078.3.13 / MA0078.3.20
MA0078.3.14
MA0078.3.15
MA0078.3.16
MA0078.3.17
MA0078.3.18
MA0078.3.19
MA0078.3.2
MA0078.3.3
MA0078.3.4
MA0078.3.5
MA0078.3.6
MA0078.3.7
MA0078.3.8
MA0078.3.9
			
Publications: Kanai Y, Kanai-Azuma M, Noce T, Saido T.C, Shiroishi T, Hayashi Y, Yazaki K. Identification of two Sox17 messenger RNA isoforms, with and without the high mobility group box region, and their differential expression in mouse spermatogenesis. The Journal of cell biology 133:667-81 (1996). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.