DNA Binding Motif

						

			
Accessions: MA0693.2 (JASPAR 2024)

			
Names: VDR
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SMiLE-seq
Length: 8
Consensus: yrrGTTCA
Weblogo: 
PSSM: P0      A      C      G      T
01    222    280     43    455      y
02    356     45    567     32      r
03    555     24    386     34      r
04     24     25    919     32      G
05     17     23     70    890      T
06     61     31     82    827      T
07     55    743     28    174      C
08    886     19     76     19      A
Type: Heterodimer
Binding TFs: P11473 (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains))
P11473
			
Publications: Nishikawa J, Kitaura M, Matsumoto M, Imagawa M, Nishihara T. Difference and similarity of DNA sequence recognized by VDR homodimer and VDR/RXR heterodimer. Nucleic Acids Res 22:2902-7 (1994). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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